Well, according to Lambert's
HMS Warrior 1860 Victoria's Ironclad Deterrent, the main deck was sealed below the wood surface that shows with an ICI product akin to what's called "Flex Seal" in the US.
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This is a liquid rubber-like compound that forms a watertight barrier between the iron deck underneath it and the wood above to prevent rain leaking into the ship and rotting it out from the inside. The hull was cleaned and--I assume--painted with a modern two-part epoxy marine paint that will last decades as a barrier to corrosion of the hull. Most of the original hull was found to be intact to an extent that it didn't need replacement interestingly enough.
Badly corroded iron parts were replaced with steel and welding was used in some areas rather than riveting. Note: You can weld steel plate to wrought iron using special welding rod...