I'm more and more convinced that the B-21 has two weapons bays, probably about the same size as the B-2's with a rotary launcher in each. If you look at the bottom of the B-2 you can see it goes weapon bays in the middle, then two access doors for the engines on each side, then doors for the landing gear. From what I can tell the B-21's landing gear is only slightly closer together than the B-2's is, but with the B-21 likely only having two engines it will be able to dispense with two of the engine access doors. Meaning even if the space between the landing gear is somewhat narrower there's still plenty of room for two weapons bays to easily fit. It seems unlikely that with all the space available the B-21 would only have one weapons bay.
Here's a pic of the bottom of the B-2 that shows all the doors on the bottom. The B-21 will have the same sort of doors in the same spots, but with one fewer engine access door on each side.
Here's a pic of the bottom of the B-2 that shows all the doors on the bottom. The B-21 will have the same sort of doors in the same spots, but with one fewer engine access door on each side.