Not as a straightforward numbering system, perhaps, but Frits Gerdessen identified at least two pre-100 systems - the 1920-1925 letter-prefix system (hence my mention of the F.B.I and F.B.II) and the 'Named
Ontwerpen'.
"...for example Drawing 11206 was a special aircraft design."
I know, having quoted Frits Gerdessen on
Tekening 11206 in reply #26 (and its English useage - "Special machine").
We now link Fokker design concepts with the surviving drawing numbers - they are often all we have left. But the existence of the 1920-1925 letter-prefixes and the 'Named
Ontwerpen' demonstrate that Fokker employed other methods of identifying design work.
I think it is worth noting that, of the 'Named
Ontwerpen', only a few can now associated with
tekening nummers. Those drawings which do survive are invaluable. But each design will have had generated multiple
tekeningen. Probably safe to say that N.V. Koninklijke Nederlandse Vliegtuigenfabriek Fokker had some other way of keeping track of what flowed through its design office and over their draughtsmen's drawing boards.