I suppose I had failed to take into account another well-known possible issue with the Avon...
Taking a second look at the engine stats I have, I see that the series 300 Avons had an airflow-mass requirement of 170-175 lb/sec... while the ATAR 9C had only a 150 lb/sec requirement.
As the Mirage III's intakes were sized to provide the proper airflow-mass for the ATAR 9C, and having them unnecessarily large would increase drag... perhaps the Avon's disappointing performance could be simply due to the test aircraft's intakes having NOT been enlarged in cross-section, thus slightly starving the Avon of needed airflow-mass? Or if they were enlarged, did that significantly increase the drag?
It was the need to enlarge the intakes on the British Phantoms to satisfy the higher airflow-mass requirements of the Spey (200-210 lb/sec vs 170 lb/sec for the J79) that increased the airframe drag of the Queen's Phantoms so significantly, after all.